| Stream Transport User Guide | Documentation on the hydraulic, hydrodynamic and hydrodynamic linkage for all advective flow options | Not Available |
| Multi-Algae Theory Manual | Model theory and documented implementation in the Advanced Eutrophication Module | Not Available |
| Temperature Module Theory | Model theory and documented implementation of water temperature module | Not Available |
| Bentic Algae Module Theory | Model theory documentation for Periphyton/Macro Algae Module | Not Available |
| pH-Alkalinity Theory | pH-Alkalinity theory documentation | Not Available |
| Sediment Diagenesis Module | Model Theory for Sediment Diagenesis Module | Not Available |
| Mercury Module Theory | Model Theory for modeling mercury | Not Available |
| Simple Toxicant Modeling | Model Theory for modeling simple toxicants | Not Available |
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